Acidimicrobiia

Acidimicrobiia
Acidimicrobium ferrooxidans
Scientific classification
Domain: Bacteria
Kingdom: Bacillati
Phylum: Actinomycetota
Norris 2013[3]
Class:
Stackebrandt et al. 1997[1][2]
Families[4]
  • Acidimicrobiales
  • "Actinomarinales"
    • "Actinomarinaceae"
  • "Spongiisociales"
    • "Benthobacteraceae"
    • "Spongiisociaceae"
Synonyms
  • Acidimicrobiidae Rainey & Ward-Rainey 1997
  • "Actinomarinidae" Ghai et al. 2013

The Acidimicrobiia are a class of Actinomycetota, in which three families, eight genera, and nine species have been described, Acidimicrobium ferrooxidans is the type species of the order.[1]

Phylogeny

The currently accepted taxonomy is based on the List of Prokaryotic names with Standing in Nomenclature (LPSN)[2] and National Center for Biotechnology Information (NCBI).[4]

MLST based phylogeny of 30 proteins.[5] 16S rRNA based LTP_10_2024[6][7][8]
Acidimicrobiales
Acidimicrobiia
Iamiaceae

Aquihabitans

Iamia

Actinomarinicola

Rhabdothermincola

Acidimicrobiales
120 marker proteins based GTDB 09-RS220[9][10][11]
Acidimicrobiia
"Actinomarinales"
"Actinomarinaceae"

Ca. "Actinomarina" Ghai et al. 2013

"Spongiisociales"
"Spongiisociaceae"

Ca. "Spongiisocius" Nguyen 2022

"Benthobacteraceae"

Ca. "Benthobacter" Silva-Solar et al. 2024 [JAHEEL01]

Ca. "Hadalibacter" Silva-Solar et al. 2024 [B3-G11]

Acidimicrobiales
UBA8190

Aciditerrimonas Itoh et al. 2011

Acidimicrobiaceae

Acidithrix Jones & Johnson 2022

Ferrithrix Johnson et al. 2009

Ferrimicrobium Johnson et al. 2009

Acidimicrobium Clark & Norris 1996

Ilumatobacteraceae

Desertimonas Asem et al. 2018

Ilumatobacter Matsumoto et al. 2009

"Poriferisodalaceae"

"Ca. Poriferisodalis" Nguyen 2022

"Hopanoidivoracaceae"

"Ca. Hopanoidivorans" Nguyen 2022

"Actinomarinicolaceae"

Actinomarinicola He et al. 2020

"Rhabdothermincolaceae"

Rhabdothermincola Liu et al. 2021

Iamiaceae

Aquihabitans Jin et al. 2013

Iamia Kurahashi et al. 2009

"Microtrichaceae"

"Ca. Neomicrothrix" corrig. Blackall et al. 1996
["Ca. Microthrix" Blackall et al. 1996 non Ragonot 1888]

"Aldehyrespiratoraceae"

"Ca. Aldehyrespirator" Nguyen 2022

Bin134

"Ca. Poriferisocius" Nguyen 2022

Genera incertae sedis

  • Acidimicrobiales
    • Acidithiomicrobium Davis-Belmar & Norris 2009
    • "Salinilacustritrichaceae" Gao et al. 2024
      • "Salinilacustrithrix" Gao et al. 2024
    • "Microtrichaceae"
      • "Candidatus Limnosphaera" Kim, Kang & Cho 2017

See also

References

  1. ^ a b Stackebrandt, E.; Rainey, F. A.; Ward-Rainey, N. L. (1997-04-01). "Proposal for a New Hierarchic Classification System, Actinobacteria classis nov". International Journal of Systematic Bacteriology. 47 (2): 479–491. doi:10.1099/00207713-47-2-479. ISSN 0020-7713.
  2. ^ a b A.C. Parte; et al. "Acidimicrobiia". List of Prokaryotic names with Standing in Nomenclature (LPSN). Retrieved 2025-02-28.
  3. ^ Norris PR (2012). "Class II. Acidimicrobiia class. nov.". In Goodfellow M, Kämpfer P, Trujillo ME, Ludwig W, Whitman WB (eds.). Bergey's Manual of Systematic Bacteriology. Vol. 5 (The Actinobacteria), part B (2nd ed.). New York: Springer. p. 1968.
  4. ^ a b C.L. Schoch; et al. "Acidimicrobiia". National Center for Biotechnology Information (NCBI) taxonomy database. Retrieved 2025-02-28.
  5. ^ Hu D, Cha G, Gao B. (2018). "A phylogenomic and molecular markers-based analysis of the class Acidimicrobiia". Frontiers in Microbiology. 9: 987. doi:10.3389/fmicb.2018.00987. PMC 5962788. PMID 29867887.
  6. ^ "The LTP". Retrieved 10 December 2024.
  7. ^ "LTP_all tree in newick format". Retrieved 10 December 2024.
  8. ^ "LTP_10_2024 Release Notes" (PDF). Retrieved 10 December 2024.
  9. ^ "GTDB release 09-RS220". Genome Taxonomy Database. Retrieved 10 May 2024.
  10. ^ "bac120_r220.sp_labels". Genome Taxonomy Database. Retrieved 10 May 2024.
  11. ^ "Taxon History". Genome Taxonomy Database. Retrieved 10 May 2024.
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