Nocardiopsis

Nocardiopsis
Scientific classification
Domain:	Bacteria
Kingdom:	Bacillati
Phylum:	Actinomycetota
Class:	Actinomycetia
Order:	Streptosporangiales
Family:	Nocardiopsaceae
Genus:	; (Brocq-Rousseau 1904) Meyer 1976
Type species
	Nocardiopsis dassonvillei; (Brocq-Rousseau 1904) Meyer 1976
Species
	See text
Synonyms
	"Brachystreptospora";

Nocardiopsis is a bacterial genus from the family Nocardiopsaceae which can produces some antimicrobial compounds,^[1]^[3]^[4] including thiopeptides.^[5] Nocardiopsis occur mostly in saline and alkaline soils.^[6]

Phylogeny

The currently accepted taxonomy is based on the List of Prokaryotic names with Standing in Nomenclature (LPSN)^[1] and National Center for Biotechnology Information (NCBI).^[2]

16S rRNA based LTP_10_2024^[7]^[8]^[9]

120 marker proteins based GTDB 09-RS220^[10]^[11]^[12]

	Nocardiopsis trehalosi Dolak, Castle & Laborde 1981 ex Evtushenko et al. 2000

Nocardiopsis~

	Nocardiopsis mangrovi corrig. Huang et al. 2024

	Nocardiopsis sediminis Muangham et al. 2016

Nocardiopsis coralliicola Li et al. 2012

Nocardiopsis halophila Al-Tai & Ruan 1994

Nocardiopsis chromatogenes Li et al. 2006

	Nocardiopsis endophytica Chantavorakit et al. 2023

	Nocardiopsis suaedae Chantavorakit et al. 2023

	Nocardiopsis composta corrig. Kämpfer, Busse & Rainey 2002

	Nocardiopsis potens Yassin et al. 2009

	Nocardiopsis akesuensis Gao et al. 2016

	Nocardiopsis mwathae Akhwale et al. 2016

Nocardiopsis gilva Li et al. 2006

	Nocardiopsis rhodophaea Li et al. 2006

	Nocardiopsis rosea Li et al. 2006

Nocardiopsis

N. ansamitocini Zhang et al. 2016

N. nikkonensis Yamamura et al. 2010

N. rhizosphaerae Zhang et al. 2016

N. salina Li et al. 2004

N. coralli Li et al. 2021

N. xinjiangensis Li et al. 2003

	N. kunsanensis Chun et al. 2000

	N. litoralis Chen et al. 2009

N. fildesensis Xu et al. 2014

	N. flavescens Fang et al. 2011

	N. lucentensis Yassin et al. 1993

N. algeriensis Bouras et al. 2015

N. alba Grund & Kroppenstedt 1990

N. quinghaiensis Chen et al. 2008

	N. arvandica Hamedi et al. 2011

	N. sinuspersici Hamedi et al. 2010

N. halotolerans Al-Zarban et al. 2002

N. akebiae Mo et al. 2024

	N. dassonvillei (Brocq-Rousseau 1904) Meyer 1976

	N. deserti Asem et al. 2020

	N. dassonvillei crassaminis Camacho Pozo et al. 2020

	N. synnemataformans Yassin et al. 1997

N. aegyptia Sabry et al. 2004

	N. tropica Evtushenko et al. 2000

	N. umidischolae Peltola et al. 2002

	N. alkaliphila Hozzein et al. 2004

	N. changdeensis Mo et al. 2024

	N. eucommiae Mo et al. 2022

	N. prasina (Miyashita, Mikami & Arai 1984) Yassin et al. 1997

N. terrae Chen et al. 2012

N. listeri Grund & Kroppenstedt 1990

	N. nanhaiensis Pan et al. 2015

	N. oceani Pan et al. 2015

N. ganjiahuensis Zhang et al. 2008

N. metallicus Schippers et al. 2002

	N. exhalans Peltola et al. 2002

	N. valliformis Yang et al. 2008

	Nocardiopsis trehalosi

	Nocardiopsis ansamitocini

Nocardiopsis_C

	Nocardiopsis gilva

	Nocardiopsis mwathae

Nocardiopsis_A

	Nocardiopsis composta

	Nocardiopsis potens

Nocardiopsis halophila [Nocardiopsis baichengensis Li et al. 2006]

Nocardiopsis suaedae

	Nocardiopsis chromatogenes

	Nocardiopsis endophytica

Nocardiopsis

"Ca. N. merdipullorum" Gilroy et al. 2021

	N. coralli

	N. salina

	N. kunsanensis [N. litoralis]

	N. xinjiangensis

N. alba

	N. alkaliphila

	N. listeri

N. terrae

	N. eucommiae

	N. prasina

N. ganjiahuensis

	N. exhalans

	N. metallicus

	N. aegyptia

	N. lucentensis

N. algeriensis

	N. changdeensis

	N. flavescens

	N. quinghaiensis

	N. sinuspersici [N. arvandica]

N. halotolerans

Glycomyces fuscus Han et al. 2014

N. dassonvillei [N. deserti]

	N. alborubida corrig. Grund & Kroppenstedt 1990

	N. synnemataformans

Unassigned species:

"N. benisuefensis" Hozzein 2003c
"N. lambiniae" Nouioui et al. 2024
"N. synnemasporogenes" El-Naggar 2014 em. Nouioui et al. 2018
"N. tangguensis" Lu et al. 2002
"N. viridoflava" Xie, Liu & Wang 2002b
"N. yanglingensis" Yan et al. 2011

References

^ ^a ^b ^c A.C. Parte; et al. "Nocardiopsis". List of Prokaryotic names with Standing in Nomenclature (LPSN). Retrieved 2025-02-28.
^ ^a ^b C.L. Schoch; et al. "Nocardiopsis". National Center for Biotechnology Information (NCBI) taxonomy database. Retrieved 2025-02-28.
^ ^a ^b "Nocardiopsis". uniprot.org. Retrieved 2016-08-18.
^ Bennur, T.; Ravi Kumar, A.; Zinjarde, S.S.; Javdekar, V. (January 2016). "Nocardiopsis species: a potential source of bioactive compounds". Journal of Applied Microbiology. 120 (1): 1–16. doi:10.1111/jam.12950. PMID 26369300. S2CID 5266243.
^ Engelhardt, K.; Degnes, K. F.; Kemmler, M.; Bredholt, H.; Fjaervik, E.; Klinkenberg, G.; Sletta, H.; Ellingsen, T. E.; Zotchev, S. B. (18 June 2010). "Production of a New Thiopeptide Antibiotic, TP-1161, by a Marine Nocardiopsis Species". Applied and Environmental Microbiology. 76 (15): 4969–4976. Bibcode:2010ApEnM..76.4969E. doi:10.1128/AEM.00741-10. PMC 2916467. PMID 20562278.
^ (ed.), Koki Horikoshi (2011). Extremophiles handbook. Tokyo: Springer. ISBN 978-4-431-53897-4. {{cite book}}: |last1= has generic name (help)
^ "The LTP". Retrieved 10 December 2024.
^ "LTP_all tree in newick format". Retrieved 10 December 2024.
^ "LTP_10_2024 Release Notes" (PDF). Retrieved 10 December 2024.
^ "GTDB release 09-RS220". Genome Taxonomy Database. Retrieved 10 May 2024.
^ "bac120_r220.sp_labels". Genome Taxonomy Database. Retrieved 10 May 2024.
^ "Taxon History". Genome Taxonomy Database. Retrieved 10 May 2024.

Li, Hong-Wei; Zhi, Xiao-Yang; Yao, Ji-Cheng; Zhou, Yu; Tang, Shu-Kun; Klenk, Hans-Peter; Zhao, Jiao; Li, Wen-Jun; Brochier-Armanet, Celine (23 April 2013). "Comparative Genomic Analysis of the Genus Nocardiopsis Provides New Insights into Its Genetic Mechanisms of Environmental Adaptability". PLOS ONE. 8 (4): e61528. Bibcode:2013PLoSO...861528L. doi:10.1371/journal.pone.0061528. PMC 3634020. PMID 23626695.
Zhang, Haibo; Saurav, Kumar; Yu, Ziquan; Mándi, Attila; Kurtán, Tibor; Li, Jie; Tian, Xinpeng; Zhang, Qingbo; Zhang, Wenjun; Zhang, Changsheng (24 June 2016). "α-Pyrones with Diverse Hydroxy Substitutions from Three Marine-Derived Nocardiopsis Strains". Journal of Natural Products. 79 (6): 1610–1618. Bibcode:2016JNAtP..79.1610Z. doi:10.1021/acs.jnatprod.6b00175. hdl:2437/229054. PMID 27300427.
Pan, HQ; Zhang, DF; Li, L; Jiang, Z; Cheng, J; Zhang, YG; Wang, HF; Hu, JC; Li, WJ (October 2015). "Nocardiopsis oceani sp. nov. and Nocardiopsis nanhaiensis sp. nov., actinomycetes isolated from marine sediment of the South China Sea". International Journal of Systematic and Evolutionary Microbiology. 65 (10): 3384–91. doi:10.1099/ijsem.0.000425. PMID 26297579.
Bennur, T.; Ravi Kumar, A.; Zinjarde, S.S.; Javdekar, V. (January 2016). "Nocardiopsis species: a potential source of bioactive compounds". Journal of Applied Microbiology. 120 (1): 1–16. doi:10.1111/jam.12950. PMID 26369300. S2CID 5266243.
Patrice, Dion; Chandra Shekhar, Nautiyal (2007). Microbiology of Extreme Soils. Springer Science & Business Media. ISBN 978-3-540-74231-9.
Horikoshi, Koki (1999). Alkaliphiles. Tokyo: Kodansha. ISBN 90-5702-458-6.
Atta-ur-Rahman, edited by (1997). Studies in Natural Products Chemistry Indices Part A. Burlington: Elsevier. ISBN 0-08-048120-5. {{cite book}}: |first1= has generic name (help)
Glasby, John S. (1992). Dictionary of antibiotic-producing organisms (1. publ. ed.). New York: Ellis Horwood. ISBN 0-13-210584-5.
Staley, Don J. Brenner ... ed. Ed. board James T. (2005). Bergey's manual of systematic bacteriology (2nd ed.). New York: Springer. ISBN 0-387-28021-9.

[LPSN-1] A.C. Parte; et al. "Nocardiopsis". List of Prokaryotic names with Standing in Nomenclature (LPSN). Retrieved 2025-02-28.

[NCBI-2] C.L. Schoch; et al. "Nocardiopsis". National Center for Biotechnology Information (NCBI) taxonomy database. Retrieved 2025-02-28.

[UniProt-3] "Nocardiopsis". uniprot.org. Retrieved 2016-08-18.

[4] Bennur, T.; Ravi Kumar, A.; Zinjarde, S.S.; Javdekar, V. (January 2016). "Nocardiopsis species: a potential source of bioactive compounds". Journal of Applied Microbiology. 120 (1): 1–16. doi:10.1111/jam.12950. PMID 26369300. S2CID 5266243.

[5] Engelhardt, K.; Degnes, K. F.; Kemmler, M.; Bredholt, H.; Fjaervik, E.; Klinkenberg, G.; Sletta, H.; Ellingsen, T. E.; Zotchev, S. B. (18 June 2010). "Production of a New Thiopeptide Antibiotic, TP-1161, by a Marine Nocardiopsis Species". Applied and Environmental Microbiology. 76 (15): 4969–4976. Bibcode:2010ApEnM..76.4969E. doi:10.1128/AEM.00741-10. PMC 2916467. PMID 20562278.

[6] (ed.), Koki Horikoshi (2011). Extremophiles handbook. Tokyo: Springer. ISBN 978-4-431-53897-4. {{cite book}}: |last1= has generic name (help)

[7] "The LTP". Retrieved 10 December 2024.

[8] "LTP_all tree in newick format". Retrieved 10 December 2024.

[9] "LTP_10_2024 Release Notes" (PDF). Retrieved 10 December 2024.

[about-10] "GTDB release 09-RS220". Genome Taxonomy Database. Retrieved 10 May 2024.

[tree-11] "bac120_r220.sp_labels". Genome Taxonomy Database. Retrieved 10 May 2024.

[taxon_history-12] "Taxon History". Genome Taxonomy Database. Retrieved 10 May 2024.

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Nocardiopsis

Phylogeny

See also

References

Further reading